And their chats are not even E2E encrypted except their 'secret chats' but they work only on one device and don't work in groups.
* Build and install a custom client with your own API key, and don't share it with anyone
* Use an Xposed module (already exists) or Cydia tweak if you're willing to root/jailbreak your phone
As for the encryption, it depends on your threat model. Yes, full E2E by default would be ideal, but even with their default cloud encryption they're probably a lot more trustable than Facebook & co. According to their FAQ, the data is scattered across servers in multiple jurdistictions, so a lot of governments would have to team up to get any data out of them.
But also, how do you handle convenient cloud backup/sync with full E2E? WhatsApp and Viber both constantly manage to lose messages for me when restoring after a device reset or switch.